Submit Your Neuroinformatics Research
Join leading computational neuroscience researchers publishing breakthrough algorithms, data analysis methods, and software tools that advance our understanding of neural systems
Two Convenient Submission Methods
Choose the submission method that works best for your workflow. Both options provide secure, efficient manuscript handling with full tracking capabilities.
ManuscriptZone Portal
Our comprehensive manuscript management system designed for neuroinformatics researchers who value complete control and real-time tracking throughout the review process.
- Auto-save functionality protects your work
- Guided workflow with discipline-specific prompts
- Real-time submission status tracking
- Direct access to reviewer comments and editor decisions
- Revision management with version control
- Supplementary data upload (datasets, code, algorithms)
Best for: Complex submissions with multiple files, collaborative authorship, or manuscripts requiring revision tracking
Submit via ManuscriptZoneQuick Submission Form
A streamlined submission process for straightforward manuscripts. Perfect for researchers who prefer a simple, fast submission without account creation.
- No account registration required
- Single-page submission form
- Fast upload for manuscript and figures
- Immediate confirmation email
- Suitable for standard article formats
Best for: Standard research articles, short communications, or authors preferring a simplified submission process
Use Quick Submission FormNeuroinformatics Article Types We Publish
We welcome diverse contributions that advance computational approaches to neuroscience. Our expert reviewers specialize in evaluating methodological rigor, algorithmic innovation, and practical applicability of neuroinformatics research.
Original Research Articles
Novel algorithms, computational models, or data analysis methods for neural data. Include validation results, performance benchmarks, and comparative analyses.
Methods & Software Tools
New computational tools, software packages, databases, or analytical pipelines for neuroinformatics research. Must include availability, documentation, and usage examples.
Machine Learning Applications
Deep learning, neural networks, or AI approaches applied to neural data analysis, brain imaging, or neurological disorder prediction. Include training datasets and performance metrics.
Database & Resource Papers
New neuroinformatics databases, ontologies, or data repositories. Must describe data structure, access methods, and long-term maintenance plans.
Systematic Reviews
Comprehensive reviews of computational methods, algorithms, or software tools in specific neuroinformatics domains. Must follow PRISMA guidelines where applicable.
Short Communications
Preliminary findings, novel algorithms, or incremental improvements to existing methods. Rapid publication for time-sensitive neuroinformatics discoveries.
Benchmark Studies
Comparative evaluations of existing algorithms, tools, or methods using standardized datasets. Must include reproducible protocols and statistical analyses.
Perspectives & Opinions
Forward-looking analyses of emerging trends, challenges, or opportunities in neuroinformatics. Must be evidence-based and cite relevant literature.
Pre-Submission Checklist
Ensure your neuroinformatics manuscript meets these requirements before submission to expedite the review process:
Word (.docx) or LaTeX format, properly formatted with sections, references, and figure captions
High-resolution images (TIFF/EPS, 300 DPI minimum), properly labeled with descriptive captions
Repository links (GitHub, Zenodo) or supplementary files for algorithms, scripts, and datasets
IRB/ethics committee approval for human data; IACUC approval for animal studies
All authors have reviewed and approved the manuscript; corresponding author designated
Declaration of financial, commercial, or personal conflicts of interest
Grant numbers, funding agencies, and sponsor acknowledgments
Brief description of significance, novelty, and why your work fits IJNN's scope
Transparent Peer Review Timeline
We believe in transparency. Here's exactly what happens after you submit your neuroinformatics manuscript, with realistic timelines based on our actual performance data:
Submission Received
Your manuscript enters our system. You receive immediate confirmation with a unique manuscript ID for tracking.
Day 0Editorial Screening
Editor-in-Chief reviews for scope fit, completeness, and basic quality standards. Plagiarism check performed using iThenticate.
Days 1-3Reviewer Assignment
Manuscript assigned to 2-3 expert reviewers specializing in your specific neuroinformatics subdomain (e.g., neural network modeling, brain imaging analysis, computational neuroscience).
Days 4-7Peer Review
Reviewers evaluate methodological rigor, algorithmic novelty, validation quality, and contribution to neuroinformatics. They assess code quality, reproducibility, and practical applicability.
Days 8-21Editorial Decision
Editor synthesizes reviewer feedback and makes decision: Accept, Minor Revisions, Major Revisions, or Reject. You receive detailed reviewer comments.
Days 22-28Revision & Re-review
If revisions requested, you submit revised manuscript with point-by-point response. Reviewers assess whether concerns have been adequately addressed.
14 days (after resubmission)Acceptance & Production
Upon acceptance, manuscript enters production. Copyediting, typesetting, and final proofs prepared. You review and approve final version.
10 daysPublication
Your article is published online with full Open Access. Immediately Your research gains worldwide visibility through indexing in Google Scholar, connecting it with the global scientific community.
Day 60 (average)Average Time to Publication: 60 Days
From submission to online publication, our streamlined process ensures your neuroinformatics research reaches the global community quickly without compromising peer review quality. Compare this to traditional journals averaging 6-12 months.
Why Neuroinformatics Researchers Choose IJNN
Expert Reviewers
Computational neuroscientists, bioinformaticians, and algorithm developers
Fast Decisions
21-day average to first decision with transparent timelines
Open Access
Immediate global visibility with CC-BY licensing
COPE
Committed to ethical publishing standards and best practices
APC Waivers
Financial support available for eligible researchers
What Makes a Strong Neuroinformatics Submission
Methodological Rigor
Algorithms & Models: Clearly describe computational methods, mathematical formulations, and implementation details. Include pseudocode or flowcharts for complex algorithms.
Validation: Demonstrate performance using benchmark datasets, cross-validation, or comparison with existing methods. Report sensitivity, specificity, accuracy, and computational efficiency.
Reproducibility: Provide code repositories (GitHub, Zenodo), parameter settings, and sample datasets. Enable other researchers to replicate your findings.
Data Quality & Availability
Datasets: Describe data sources, preprocessing steps, quality control measures, and any data transformations applied.
Sharing: Deposit data in public repositories (NCBI, EBI, Dryad) with accession numbers. If data cannot be shared, explain restrictions and provide access protocols.
Standards: Follow community standards (BIDS for neuroimaging, NWB for neurophysiology, MIAME for microarrays).
Software & Tools
Documentation: Provide comprehensive user guides, API documentation, and usage examples.
Availability: Release software under open-source licenses (MIT, GPL, Apache). Include installation instructions and system requirements.
Testing: Demonstrate software reliability through unit tests, integration tests, and real-world use cases.
Submission Requirements
Manuscript Format
File Type: Microsoft Word (.docx) or LaTeX (submit PDF + source files)
Structure: Title page, Abstract (250 words), Keywords (5-8 terms), Introduction, Methods, Results, Discussion, Conclusions, References
Length: Varies by article type (see above). Excludes references, figures, and tables.
References: Vancouver or APA style. Use reference management software (EndNote, Zotero, Mendeley).
Figures & Tables
Figures: TIFF, EPS, or high-resolution PNG (300 DPI minimum). Each figure in separate file.
Captions: Descriptive captions explaining all symbols, abbreviations, and statistical tests.
Tables: Editable format (Word/Excel), not images. Include column headers and units.
Supplementary Materials
Code: GitHub/GitLab repository links or ZIP archives with README files
Data: Links to public repositories or supplementary data files (CSV, HDF5, MAT)
Videos: Algorithm demonstrations, software tutorials (MP4, AVI, max 100 MB)
Appendices: Extended methods, additional analyses, mathematical derivations
Ethical Considerations for Neuroinformatics Research
Human Data: If your algorithms analyze human neural data (EEG, fMRI, MEG), provide IRB approval number and confirm informed consent was obtained. Describe data anonymization procedures.
Animal Studies: For computational analyses of animal neural recordings, provide IACUC approval and confirm compliance with ARRIVE guidelines.
Data Privacy: Explain how personally identifiable information was removed from datasets. Describe security measures for sensitive data.
Dual Use: Consider potential misuse of algorithms (e.g., brain-computer interfaces, neural decoding). Discuss ethical implications where relevant.
Authorship: All listed authors must have made substantial contributions to algorithm development, validation, or manuscript preparation. Acknowledge contributors who don't meet authorship criteria.
Conflicts of Interest: Disclose financial relationships with companies that could benefit from your algorithms or software tools.
After Submission: What to Expect
Immediate Confirmation: You'll receive an automated email with your manuscript ID within minutes of submission.
Status Updates: Track your manuscript's progress through the ManuscriptZone portal. Receive email notifications at each stage (editor assigned, reviewers invited, reviews received, decision made).
Reviewer Comments: If revisions are requested, you'll receive detailed, constructive feedback from expert neuroinformatics reviewers. Comments typically address methodological rigor, validation quality, code documentation, and reproducibility.
Revision Process: Submit revised manuscript with point-by-point response to reviewer comments. Highlight changes in the manuscript (track changes or color coding).
Appeals: If your manuscript is rejected, you may appeal the decision with new data or clarifications. Appeals are reviewed by the Editor-in-Chief.
Production: Upon acceptance, our production team handles copyediting, typesetting, and XML conversion. You'll review proofs before final publication.
Open Access Benefits for Neuroinformatics
Maximum Visibility: Your algorithms, methods, and tools reach the entire neuroinformatics community immediately upon publication. No subscription barriers prevent access.
Higher Citations: Open Access articles receive 30-50% more citations than subscription-based articles, increasing your research impact.
Global Reach: Researchers in developing countries, industry scientists, and independent researchers can access your work without institutional subscriptions.
Funding Compliance: Meets Open Access mandates from NIH, NSF, Wellcome Trust, European Commission, and other major funding agencies.
Social Media Sharing: Freely share your published work on ResearchGate, Twitter, LinkedIn, and personal websites without copyright restrictions.
Derivative Works: CC-BY license allows others to build upon your algorithms, create improved versions, or integrate your methods into larger pipelines (with proper attribution).
Article Processing Charges (APCs)
IJNN operates on an Open Access model supported by Article Processing Charges. These fees cover peer review management, copyediting, typesetting, XML conversion, DOI registration, and long-term archiving.
Standard APC: Contact editorial office for current rates
Waivers Available: We offer affordable or partial APC waivers for researchers from low-income countries, unfunded researchers, and authors facing financial hardship. Waiver requests are handled confidentially and do not affect editorial decisions.
Institutional Agreements: Check if your institution has a prepaid agreement or discount arrangement with Open Access Pub.
Grant Funding: Most neuroinformatics grants (NIH R01, NSF, European Commission) include Open Access publication costs in their budgets.
Frequently Asked Questions
Can I submit a manuscript that extends my conference paper?
Yes, provided the journal article contains substantial new content (typically 30%+ new material). Cite the conference paper and explain the new contributions in your cover letter.
Do you accept manuscripts with preprints?
Absolutely. Posting preprints on arXiv, bioRxiv, or other servers does not affect consideration. We encourage preprint posting for rapid dissemination.
What if my algorithm is proprietary or patent-pending?
You can publish methodological descriptions and validation results without disclosing proprietary implementation details. Discuss with the editor during submission.
Can I suggest reviewers?
Yes, you may suggest 3-5 potential reviewers with expertise in your specific area. Provide names, affiliations, and email addresses. Editors consider suggestions but are not obligated to use them.
How do I submit large datasets or code repositories?
Upload datasets to public repositories (Zenodo, Figshare, Dryad) and provide DOIs or URLs in your manuscript. For code, use GitHub/GitLab with release tags.
What happens if reviewers disagree?
The editor weighs reviewer comments based on expertise and argument quality. If reviewers fundamentally disagree, the editor may seek additional reviews or make a decision based on their own assessment.
Ready to Submit Your Neuroinformatics Research?
Join the growing community of computational neuroscientists, bioinformaticians, and algorithm developers publishing with IJNN. Our expert reviewers and streamlined process ensure your work receives fair, rigorous evaluation and rapid publication.
Submit via ManuscriptZone Use Quick Submission FormNeed assistance with your submission? Our editorial team is here to help: [email protected]
